TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sel 0   selenoprotein O homolog [Ectocarpus siliculosus]
         (672 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01001750.1| Ascogregarina taiwanensis Contig1993, whole g...    82   2e-16

>gb|ABJQ01001750.1| Ascogregarina taiwanensis Contig1993, whole genome shotgun sequence
          Length = 1603

 Score = 82.4 bits (202), Expect = 2e-16
 Identities = 40/55 (72%), Positives = 46/55 (83%), Gaps = 2/55 (3%)
 Frame = -2

Query: 197 GSFAGQLGDGAAMYLGEVEGPSGR--WEIQFKGAGLTPYSRSADGRKVLRSSIRE 249
           G FAGQLGDGAA+YLGEV G +G   W +Q KG+GLTP+SR ADGRKVLRSS+RE
Sbjct: 228 GVFAGQLGDGAAIYLGEVRGAAGAETWALQLKGSGLTPFSRDADGRKVLRSSLRE 64



 Score = 56.2 bits (134), Expect(2) = 3e-10
 Identities = 33/77 (42%), Positives = 42/77 (54%)
 Frame = -1

Query: 163 AEEGQREDAAEYFSGNKLMPGAQPHAHAYCGHQFGSFAGQLGDGAAMYLGEVEGPSGRWE 222
           AE+   +D A  FSGN+L+PG++P AH YCGHQFG F   L          +   S RW 
Sbjct: 361 AEDIPEDDLAAVFSGNQLLPGSKPFAHCYCGHQFGGFLHPL----------IV*RSFRWS 212

Query: 223 IQFKGAGLTPYSRSADG 239
           I  +G  L+   RSA G
Sbjct: 211 IGRRGCDLS--WRSAGG 167



 Score = 25.0 bits (53), Expect(2) = 3e-10
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 138 VAPDPVVKPVMVAASNSALGLLGLAAE 164
           V P P+    +VAAS SAL ++GL  E
Sbjct: 467 VNPTPLRDVKLVAASKSALEIVGLKGE 387


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,921,061
Number of Sequences: 5379
Number of extensions: 77831
Number of successful extensions: 601
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of query: 672
length of database: 2,049,803
effective HSP length: 93
effective length of query: 579
effective length of database: 1,549,556
effective search space: 897192924
effective search space used: 897192924
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)